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Databases & Software

Find molecular databases and software tools with a combined search of the HSLS Online Bioinformatics Resource Collection (OBRC) and Nucleic Acids Research.

Protocols

Videos

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  1. Chromatin involves the purification of in vivo cross-linked
    Provider: Journal of Visualized Experiments
  2. A robust ChIP protocol, using maize (Zea mays) as a model system, and present a general strategy to systematically optimize this protocol for any type of tissue.
    Provider: Plant Methods
  3. This short protocol is for the preparation of tissue samples for ChIP assay
    Provider: Aviva Systems Biology
  4. Standard and verified ChIP protocol
    Provider: Genome Center, UC Davis
  5. Cloning pulled down DNA from ChIP assay
    Provider: Farnham Laboratory, UC Davis
  6. Protocol for yeast ChIP in great details, may also used for other cell types.
    Provider: The Hahn Lab, The Fred Hutchinson Cancer Research Center and Howard Hughes Medical Institute, Seattle
  7. http://sites.bio.indiana.edu/~pikaardlab/PDFs%20an...
    Provider: Craig Pikaard's Laboratory, Indiana University
  8. micro ChIP protocol is suitable for up to eight parallel histone and/or transcription factor immunoprecipitations from a single batch of 1,000 cells. microChIP technique is also suitable for monitoring the association of one protein with multiple genomic sites in 100 cells.
    Provider: Collas Lab, University of Oslo, Institute of Basic Medical Sciences
  9. Formaldehyde cross-linking and chromatin
    Provider: Jeffrey M. Rosen, Department of Molecular and Cellular Biology, Baylor College of Medicine
  10. Formaldehyde cross-linking and chromatin
    Provider: Rosen Lab, Department of Molecular and Cellular Biology, Baylor College of Medicine
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