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Databases & Software

Find molecular databases and software tools with a combined search of the HSLS Online Bioinformatics Resource Collection (OBRC) and Nucleic Acids Research.



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  1. Source: Current Protocols in Human Genetics
    Date: April 01, 2012
    Authors: Francois Vigneault, Dmitry Ter‐Ovanesyan, Shahar Alon, Seda Eminaga, Danos C. Christodoulou, J. G. Seidman, Eli Eisenberg, George M. Church
  2. If you are new to miRNA study, Ambion
    Provider: Ambion
  3. Authors: Justin M. Wolter1,2, Kasuen Kotagama1,2, Cody S. Babb2, Marco Mangone1,2
  4. Summary: MiRNA Biogenesis and Regulation of Diseases: An Overview MicroRNAs (miRNAs) are small RNA molecules, with their role in gene silencing and translational repression by binding to target mRNAs. Since...
    Published: Oct-14-2016
    Test: 2000
  5. Source: Current Protocols in Molecular Biology
    Date: July 01, 2011
    Authors: Martha F. Kramer
  6. Describes a method for purifying miRNAs from total RNA using PAGE gel.
    Provider: Ambion
  7. Authors: Heiko Lemcke1,2,3, Natalia Voronina1,2,3, Gustav Steinhoff1,2,3, Robert David1,2,3
  8. Summary: Prediction of Plant miRNA Genes This chapter presents procedures for the computational identification of plant miRNA genes. In the first procedure, homologs of known miRNAs are identified...
    Published: Jan-01-2009
    Test: 2000
  9. Source: Current Protocols in Pharmacology
    Date: December 01, 2017
    Authors: Botros B. Shenoda, Sujay Ramanathan, Seena K. Ajit
  10. This protocol consists of the following procedures: 1. Oligo Design; 2. ImpA Synthesis; 3. Synthesizing Oligos; 4. Oligonucleotide Adenylation; 5. Small RNA Purification; 6. 3' Adaptor Ligation; 7. 5' Adaptor Ligation; 8. RT-PCR; 9. Concatamerization; 10. Cloning into Topo vector; 11. Screen and SequencemiRNACl...
    Provider: Bartel Lab, MIT
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