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Databases/Tools

  • CRISPRcompar

    CRISPRcompar Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) elements are used in CRISPRcompar as a genetic marker for comparative and evolutionary analysis of closely related bacterial strains.

  • SEA

  • CRISPRFinder

    CRISPRFinder Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) Finder detects this family of direct repeats found in the DNA of many bacteria and archaea.

  • CRISPRz

  • CHOPCHOP

    CHOPCHOP CHOPCHOP is a web tool for selecting the optimum target sites for CRISPR/Cas9- or TALEN-directed mutagenesis. It can be run with three basic input options, or with additional advanced parameters. The basic input comprises: (i...

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Find More Resources from PubMed Articles

  1. indCAPS: A tool for designing screening primers for CRISPR/Cas9 mutagenesis events.
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    Issn: 1932-6203
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    Volume: 12
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    Issue: 11
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    Date: 2017
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    Journal: PLoS One. 2017;12(11)
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    Authors: Hodgens C, Nimchuk ZL, Kieber JJ
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  2. A heart-enriched antisense long non-coding RNA regulates the balance between cardiac and skeletal muscle triadin.
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    Issn: 0006-3002
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    Volume: 1865
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    Issue: 2
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    Date: 2018 02
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    Journal: Biochim Biophys Acta. 2018 02;1865(2)
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    Authors: Zhang L, Salgado-Somoza A, Vausort M[...]
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  3. A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action.
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    Issn: 1553-7358
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    Volume: 13
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    Issue: 10
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    Date: 2017 Oct
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    Journal: PLoS Comput Biol. 2017 Oct;13(10)
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    Authors: Abadi S, Yan WX, Amar D[...]
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  4. CRISPulator: a discrete simulation tool for pooled genetic screens.
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    Issn: 1471-2105
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    Volume: 18
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    Issue: 1
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    Date: 2017 Jul 21
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    Journal: BMC Bioinformatics. 2017 Jul 21;18(1)
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    Authors: Nagy T, Kampmann M
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  5. Computational Prediction of the Immunomodulatory Potential of RNA Sequences.
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    Issn: 1940-6029
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    Volume: 1632
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    Date: 2017
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    Journal: Methods Mol Biol. 2017;1632
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    Authors: Nagpal G, Chaudhary K, Dhanda SK[...]
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  6. A permutation-based non-parametric analysis of CRISPR screen data.
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    Issn: 1471-2164
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    Volume: 18
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    Issue: 1
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    Date: 2017 07 19
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    Journal: BMC Genomics. 2017 07 19;18(1)
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    Authors: Jia G, Wang X, Xiao G
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  7. A systematic evaluation of nucleotide properties for CRISPR sgRNA design.
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    Issn: 1471-2105
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    Volume: 18
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    Issue: 1
    |
    Date: 2017 Jun 06
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    Journal: BMC Bioinformatics. 2017 Jun 06;18(1)
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    Authors: Kuan PF, Powers S, He S[...]
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  8. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
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    Issn: 1471-2164
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    Volume: 18
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    Issue: 1
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    Date: 2017 05 15
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    Journal: BMC Genomics. 2017 05 15;18(1)
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    Authors: Zhu LJ, Lawrence M, Gupta A[...]
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  9. microTaboo: a general and practical solution to the k-disjoint problem.
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    Issn: 1471-2105
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    Volume: 18
    |
    Issue: 1
    |
    Date: 2017 May 02
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    Journal: BMC Bioinformatics. 2017 May 02;18(1)
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    Authors: Al-Jaff M, Sandström E, Grabherr M
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  10. Establishment of expanded and streamlined pipeline of PITCh knock-in - a web-based design tool for MMEJ-mediated gene knock-in, PITCh designer, and the variations of PITCh, PITCh-TG and PITCh-KIKO.
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    Issn: 2165-5987
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    Volume: 8
    |
    Issue: 3
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    Date: 2017 May 04
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    Journal: Bioengineered. 2017 May 04;8(3)
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    Authors: Nakamae K, Nishimura Y, Takenaga M[...]
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