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Databases/Tools

Find molecular databases & software tools with a combined search of the HSLS
Online Bioinformatics Resource Collection (OBRC) & the BioMed Central Databases collection.

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  1. Applications for protein sequence–function evolution data -- mRNA/protein expression analysis and coding SNP scoring ...
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    Conduct protein classification, expression analysis and SNP function screening.
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    Find Articles Citing This Tool:
    OBRC
  2. Mouse SNP Minernew windowpreview
    Contains mouse single nucleotide polymorphisms (SNPs) that are predicted to cause missense, nonsense, frameshift, or splice site mutations.
    Subject Areas: Genetics
    Content: Sequence, Gene, Curated
    BioMed Central Databases
  3. SNPbox -- Web-based High-throughput Primer Design from Gene to Genome
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    ... for large-scale amplification and sequencing projects aimed at constructing single nucleotide polymorphisms (SNPs) maps.
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    Find Articles Citing This Tool:
    OBRC
  4. SNPSTRnew windowpreview
    Contains compound microsatellite-SNP markers in human, dog, mouse, rat and chicken.
    Subject Areas: Genetics, Genomics, Bioinformatics
    Content: Organism, Gene, SNP, Sequence, Curated
    BioMed Central Databases
  5. SNPsFinder -- a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes
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    Conduct genome-wide identification of SNPs in microorganisms.
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    Find Articles Citing This Tool:
    OBRC
  6. D-HaploDB (Definitive Haplotype Database)new windowpreview
    A resource of genome-wide definitive haplotypes determined from a collection of Japanese complete hydatidiform moles (CHMs), each of which carries a genome derived from a single sperm.
    Subject Areas: Genetics, Genomics
    Content: DNA, Sequence, SNP, Curated
    BioMed Central Databases
  7. IPD -- the Immuno Polymorphism Database
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    Search for information on polymorphic genes in the immune system.
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    Find Articles Citing This Tool:
    OBRC
  8. PolyDomsnew windowpreview
    A database of human coding single nucleotide polymorphisms (SNPs) and their annotations. Integrates several coding SNPs (cSNPs) and protein-related information resources and predicts the implications of the non-synonymous SNPs (nsSNPs).
    Subject Areas: Genetics, Medical genetics
    Content: SNP, Disease, Curated, Sequence
    BioMed Central Databases
  9. SNP-RFLPing -- restriction enzyme mining for SNPs in genomes
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    Find suitable restriction enzymes for assays on a batch of SNPs and genes from the human, rat, and mouse genomes.
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    Find Articles Citing This Tool:
    OBRC
  10. MamPol (Mammalia Polymorphism Database)new windowpreview
    A collection of all the existing polymorphic sequences in the Mammalia group. Search for any polymorphic set according to different parameter values of nucleotide diversity.
    Subject Areas: Genomics, Genetics
    Content: SNP, Sequence, Links to other sources
    BioMed Central Databases
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