search.HSLS.MolBio About search.HSLS.MolBio

Databases/Tools

Find molecular databases and software tools with a combined search of the
HSLS Online Bioinformatics Resource Collection (OBRC) and the BioMed Central Databases collection.
Guided Tour

Articles on Databases/Tools

Find journal articles specifically on molecular databases and software tools using a filtered PubMed search.
Guided Tour

Genes/Proteins

Find information on genes and proteins with a combined search of NCBI Entrez Gene and the BIOBASE Knowledge Library*.
Guided Tour

Pathways

Find information on metabolic and signaling pathways with a combined search of NCBI BioSystems,
the Protein Lounge Pathway Database* and the Science STKE Database of Cell Signaling*.

Web

Find information on the Web using Clusty, the results clustering search engine.
Results 1-20 of about 25|
Details
  1. DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.
    new windowpreview
    Issn: 1471-2105
    |
    Volume: 10 Suppl 6
    |
    Date: 2009
    |
    Journal: BMC Bioinformatics. 2009;10 Suppl 6
    |
    Authors: Sebestyén E, Nagy T, Suhai S[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  2. Promoter analysis: gene regulatory motif identification with A-GLAM.
    new windowpreview
    Issn: 1064-3745
    |
    Volume: 537
    |
    Date: 2009
    |
    Journal: Methods Mol Biol. 2009;537
    |
    Authors: Mariño-Ramírez L, Tharakaraman K, Spouge JL[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  3. BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network.
    new windowpreview
    Issn: 1367-4811
    |
    Volume: 25
    |
    Issue: 4
    |
    Date: 2009 Feb 15
    |
    Journal: Bioinformatics. 2009 Feb 15;25(4)
    |
    Authors: Ishiwata RR, Morioka MS, Ogishima S[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  4. PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups.
    new windowpreview
    Issn: 1471-2164
    |
    Volume: 9
    |
    Date: 2008
    |
    Journal: BMC Genomics. 2008;9
    |
    Authors: Chang WC, Lee TY, Huang HD[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  5. ROSY--a flexible and universal database and bioinformatics tool platform for Roseobacter related species.
    new windowpreview
    Issn: 1386-6338
    |
    Volume: 8
    |
    Issue: 2
    |
    Date: 2008
    |
    Journal: In Silico Biol. 2008;8(2)
    |
    Authors: Pommerenke C, Gabriel I, Bunk B[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  6. The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis.
    new windowpreview
    Issn: 0091-7451
    |
    Volume: 72
    |
    Date: 2007
    |
    Journal: Cold Spring Harb Symp Quant Biol. 2007;72
    |
    Authors: Mockler TC, Michael TP, Priest HD[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  7. From promoter analysis to transcriptional regulatory network prediction using PAINT.
    new windowpreview
    Issn: 1064-3745
    |
    Volume: 408
    |
    Date: 2007
    |
    Journal: Methods Mol Biol. 2007;408
    |
    Authors: Gonye GE, Chakravarthula P, Schwaber JS[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  8. Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets.
    new windowpreview
    Issn: 1471-2164
    |
    Volume: 8
    |
    Date: 2007
    |
    Journal: BMC Genomics. 2007;8
    |
    Authors: Chelala C, Hahn SA, Whiteman HJ[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  9. Exploring conservation of transcription factor binding sites with CONREAL.
    new windowpreview
    Issn: 1064-3745
    |
    Volume: 395
    |
    Date: 2007
    |
    Journal: Methods Mol Biol. 2007;395
    |
    Authors: Berezikov E, Guryev V, Cuppen E
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  10. Comparative genomics-based orthologous promoter analysis using the DoOP database and the DoOPSearch web tool.
    new windowpreview
    Issn: 1064-3745
    |
    Volume: 395
    |
    Date: 2007
    |
    Journal: Methods Mol Biol. 2007;395
    |
    Authors: Barta E
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  11. Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.
    new windowpreview
    Issn: 1362-4962
    |
    Volume: 35
    |
    Issue: Web Server issue
    |
    Date: 2007 Jul
    |
    Journal: Nucleic Acids Res. 2007 Jul;35(Web Server issue)
    |
    Authors: Okumura T, Makiguchi H, Makita Y[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  12. PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis.
    new windowpreview
    Issn: 1362-4962
    |
    Volume: 35
    |
    Issue: Web Server issue
    |
    Date: 2007 Jul
    |
    Journal: Nucleic Acids Res. 2007 Jul;35(Web Server issue)
    |
    Authors: Chang LW, Fontaine BR, Stormo GD[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  13. Comparative promoter analysis in vertebrate genomes with the CORG workbench.
    new windowpreview
    Issn: 1064-3745
    |
    Volume: 338
    |
    Date: 2006
    |
    Journal: Methods Mol Biol. 2006;338
    |
    Authors: Dieterich C, Vingron M
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  14. PromAn: an integrated knowledge-based web server dedicated to promoter analysis.
    new windowpreview
    Issn: 1362-4962
    |
    Volume: 34
    |
    Issue: Web Server issue
    |
    Date: 2006 Jul 1
    |
    Journal: Nucleic Acids Res. 2006 Jul 1;34(Web Server issue)
    |
    Authors: Lardenois A, Chalmel F, Bianchetti L[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  15. MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
    new windowpreview
    Issn: 1362-4962
    |
    Volume: 34
    |
    Issue: Database issue
    |
    Date: 2006 Jan 1
    |
    Journal: Nucleic Acids Res. 2006 Jan 1;34(Database issue)
    |
    Authors: Sun H, Palaniswamy SK, Pohar TT[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  16. CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.
    new windowpreview
    Issn: 1362-4962
    |
    Volume: 34
    |
    Issue: Database issue
    |
    Date: 2006 Jan 1
    |
    Journal: Nucleic Acids Res. 2006 Jan 1;34(Database issue)
    |
    Authors: Kawaji H, Kasukawa T, Fukuda S[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  17. FAST DB: a website resource for the study of the expression regulation of human gene products.
    new windowpreview
    Issn: 1362-4962
    |
    Volume: 33
    |
    Issue: 13
    |
    Date: 2005
    |
    Journal: Nucleic Acids Res. 2005;33(13)
    |
    Authors: de la Grange P, Dutertre M, Martin N[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  18. MatInspector and beyond: promoter analysis based on transcription factor binding sites.
    new windowpreview
    Issn: 1367-4803
    |
    Volume: 21
    |
    Issue: 13
    |
    Date: 2005 Jul 1
    |
    Journal: Bioinformatics. 2005 Jul 1;21(13)
    |
    Authors: Cartharius K, Frech K, Grote K[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  19. CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets.
    new windowpreview
    Issn: 1362-4962
    |
    Volume: 32
    |
    Issue: Web Server issue
    |
    Date: 2004 Jul 1
    |
    Journal: Nucleic Acids Res. 2004 Jul 1;32(Web Server issue)
    |
    Authors: Karanam S, Moreno CS
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
  20. HOMGL-comparing genelists across species and with different accession numbers.
    new windowpreview
    Issn: 1367-4803
    |
    Volume: 20
    |
    Issue: 1
    |
    Date: 2004 Jan 1
    |
    Journal: Bioinformatics. 2004 Jan 1;20(1)
    |
    Authors: Blüthgen N, Kiełbasa SM, Cajavec B[...]
    |
    Find Articles Citing This Article:
    PubMed Filtered Search
previous · 1 · 2 · next