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Databases/ToolsFind molecular databases and software tools with a combined search of the
HSLS Online Bioinformatics Resource Collection (OBRC) and the BioMed Central Databases collection.
Articles on Databases/ToolsFind journal articles specifically on molecular databases and software tools using a filtered PubMed search.
Genes/ProteinsFind information on genes and proteins with a combined search of NCBI Entrez Gene and the BIOBASE Knowledge Library*.
PathwaysFind information on metabolic and signaling pathways with a combined search of NCBI BioSystems,
the Protein Lounge Pathway Database* and the Science STKE Database of Cell Signaling*.
ProtocolsFind experimental protocols with a combined search of Protocol Online, Cold Spring Harbor Protocols*, Current Protocols*,
Methods*, Methods in Enzymology*, Nature Methods*, Nature Protocols*, SpringerProtocols*, and STKE Protocols*.
WebFind information on the Web using Clusty, the results clustering search engine.
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Results 1-20 of about 58|
- remixTop 58 Results
- ChIP (14)
- Cross-Linking (8)
- Yeast (5)
- Regulation (3)
- Tissue (3)
- Target Gene (2)
- Other Topics (19)
- Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucle...new windowpreview
Author: Marjorie Brand, Shravanti Rampalli, Chandra-Prakash Chaturvedi and F. Jeffrey Dilworth Affiliation: Sprott Center for Stem Cell Research, Regenerative Medicine Program, Ottawa Health Research Institute Access: PITT-UPMC Users Only - Chromatin involves the purification of in vivo cross-linked
Provider: Journal of Visualized Experiments - Genome-Wide Identification of Binding Sites for the Nitric Oxide-Sensitive Transcriptional Regulator NsrRnew windowpreview
Journal: Methods in Enzymology, Volume 437, 2008, Pages 211-233 Author: Sam Efromovich, David Grainger, Diane Bodenmiller, Stephen Spiro Access: PITT-UPMC Users Only - Using ChIP-chip and ChIP-seq to study the regulation of gene expression: Genome-wide localization studies reveal widespr...new windowpreview
Journal: Methods, Volume 48, Issue 4, August 2009, Pages 398-408 Author: Daniel A. Gilchrist, David C. Fargo, Karen Adelman Access: PITT-UPMC Users Only - Application of the Chromatin Immunoprecipitation Method to Identify in Vivo Protein-DNA Associations in Fission Yeastnew windowpreview
Journal: Sci. STKE 2000 (56), pl1. [DOI: 10.1126/stke.2000.56.pl1] Author: Kohta Takahashi, Shigeaki Saitoh, and Mitsuhiro Yanagida (31 October 2000) Access: PITT-UPMC Users Only - An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plantsnew windowpreview
Author: Abdelaty Saleh, Raúl Alvarez-Venegas & Zoya Avramova Affiliation: School of Biological Sciences, University of Nebraska Access: PITT-UPMC Users Only - A robust ChIP protocol, using maize (Zea mays) as a model system, and present a general strategy to systematically optimize this protocol for any type of tissue.
Provider: Plant Methods Journal: Methods in Enzymology, Volume 410, 2006, Pages 316-341 Author: Nicolas Nègre, Sergey Lavrov, Jérôme Hennetin, Michel Bellis, Giacomo Cavalli Access: PITT-UPMC Users Only Journal: Methods, Volume 48, Issue 3, July 2009, Pages 240-248 Author: Dominic Schmidt, Michael D. Wilson, Christiana Spyrou, Gordon D. Brown, James Hadfield, Duncan T. Odom Access: PITT-UPMC Users Only - UV Laser Cross-linking: A Real-Time Assay to Study Dynamic Protein/DNA Interactions During Chromatin Remodelingnew windowpreview
Journal: Sci. STKE 2004 (256), pl13. [DOI: 10.1126/stke.2562004pl13] Author: Akhilesh K. Nagaich and Gordon L. Hager (26 October 2004) Access: PITT-UPMC Users Only Author: John Arne Dahl & Philippe Collas Affiliation: Department of Biochemistry, Faculty of Medicine, Institute of Basic Medical Sciences, University of Oslo Access: PITT-UPMC Users Only - This short protocol is for the preparation of tissue samples for ChIP assay
Provider: Aviva Systems Biology Journal: Methods in Enzymology, Volume 408, 2006, Pages 416-429 Author: Neal Sugawara, James E. Haber Access: PITT-UPMC Users Only Journal: Methods, Volume 41, Issue 3, March 2007, Pages 304-311 Author: Sushma Shivaswamy, Vishwanath R. Iyer Access: PITT-UPMC Users Only Author: Tong Ihn Lee, Sarah E Johnstone and Richard A Young Affiliation: Whitehead Institute for Biomedical Research, 9 Cambridge Center Access: PITT-UPMC Users Only - Standard and verified ChIP protocol
Provider: Genome Center, UC Davis Journal: Methods in Enzymology, Volume 401, 2005, Pages 42-61 Author: Masaharu Sakai, Masami Muramatsu Access: PITT-UPMC Users Only - Single-molecule and population probing of chromatin structure using DNA methyltransferasesnew windowpreview
Journal: Methods, Volume 41, Issue 3, March 2007, Pages 320-332 Author: Jessica A. Kilgore, Scott A. Hoose, Tanya L. Gustafson, Weston Porter, Michael P. Kladde Access: PITT-UPMC Users Only - Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor bi...new windowpreview
Author: Arnab Mukhopadhyay, Bart Deplancke, Albertha J M Walhout & Heidi A Tissenbaum Affiliation: Program in Gene Function and Expression, Program in Molecular Medicine, Aaron Lazare Research Building, University of Massachusetts Medical School Access: PITT-UPMC Users Only - Cloning pulled down DNA from ChIP assay
Provider: Farnham Laboratory, UC Davis